Guide to Choosing Loading Control and Epitope Tagging Antibodies

Dear friends, do you feel at a loss when facing various Loading Control and Epitope Tagging Antibodies during protein immunoblotting? Loading Control proteins are encoded by housekeeping genes in organisms and are stably expressed in multiple tissues. They are used to verify whether immunological experiments are proceeding normally and as a semi-quantitative detection standard for protein expression. So, how do you correctly choose loading control antibodies? You can refer to the following points.

I. Sample Species Origin

  1. For samples from mammalian tissues or cells, generally choose β-actin, α-tubulin, GAPDH, Lamin-B, Histone H3, Na+/K+-ATPase.
  2. For plant-derived samples, generally choose plant actin, Rubisco, etc.
  3. For other samples with less research, choose the appropriate protein as an internal reference by consulting relevant literature or databases.
II. Molecular Weight of the Target Protein

Ensure that the molecular weight of the target protein differs from that of the loading control by more than 5KDa to prevent interference during detection. For example, if the target protein is 40KDa, it is not suitable to choose β-actin (42KDa) as an loading control. Consider using GAPDH (36KDa) or β-tubulin (55KDa) as loading control.

III. Expression Site of the Internal Reference Protein

Therefore, the choice of loading control protein varies with the protein extraction site. For example, when extracting cytoplasmic and nuclear proteins separately instead of total proteins, choose loading control proteins expressed in the corresponding site. For instance, H3 is highly and stably expressed in the cell nucleus and theoretically not expressed in the cytoplasm. So, for cytoplasmic protein extraction, H3 should not be used as an internal reference protein. Instead, choose β-actin, GAPDH, α-Tubulin, etc., which are expressed in the cytoplasm as internal reference proteins.

Note: Avoid the following situations when using loading control antibodies 

Subcellular Localization

Loading Control Protein

Molecular Weight (KDa)

Notes

Cytoplasm, Whole Cell

β-actin

42

Not suitable for nuclear extracts . β-actin is a component of chromatin remodeling complexes; may not be suitable for situations where there are significant age differences among research subjects.

α-Tubulin

55

Not suitable for situations where there are significant age differences among research subjects. The expression of tubulin changes with antimicrobial and antimitotic drugs, so it is not suitable when adding anticancer and antifungal drugs.

β-Tubulin

55

GAPDH

36

Cell hypoxia will cause the expression of GAPDH to increase, so it is not suitable for studies related to oxygen. Factors such as diabetes can lead to increased expression of GAPDH.

Vinculin

117

Can be referred to for large molecular weight proteins.

Mitochondria

COXIV Series

15-17

This series of proteins is mainly concentrated at 15-17KDa. If the target protein molecular weight is close, consider other loading control antibodies.

HSP60

60

 

Nucleus

VDAC1/2

31-37

This series of proteins is mainly concentrated at 31-37KDa.

Lamin B1

66

Not suitable for embryonic stem cells, not suitable as an loading control in apoptosis experiments.

PCNA

36

Not suitable for non-proliferating cells.

TBP

33-43

TBP is 37-43KDa in humans and 33-36KDa in mice and rats, not suitable for apoptosis experiments.

YY1

65-70

 

Histone H3

17

Most proteins have a molecular weight of about 17KDa. If the target protein molecular weight is close, consider other loadong control antibodies.

Whole Blood, Serum, Plasma

Transferrin

77

Expression is affected by certain disease states and treatments, such as retinoic acid.

Albumin

66

The content is extremely high, pay attention to reducing the sample loading in WB experiments.

 

Label Antibodies Work Better When Used Together

In experiments studying protein interactions, such as pull-down, epitope tags can be fused to the N or C terminus of the target protein through molecular biological methods. Commonly used epitope tags include His, HA, Myc, and GST. These epitope tags usually do not affect the biological activity and intracellular localization of the target protein. The emergence of epitope tags has provided convenience for scientific research and industrial production.

Epitope Tag

Tag Sequence

Molecular Weight (KDa)

HA Tag

YPYDVPDYA

1.1

Myc Tag

EQKLISEEDL

1.2

Flag Tag

DYKDDDDK

1

GST Tag

-

26

GFP Tag

-

26.9

V5 Tag

GKPIPNPLLGLDST

1.4

S-tag

KETAAAKFERQHMDS

1.8

E-tag

GAPVPYPDPLEPR

1.4

Product Information

Type

Product Name

Molecular Weight (KDa)

Product Number

Loading Control Antibody

β-actin, Mouse mAb

42

30101ES

β-actin, Rabbit pAb

42

30102ES

GAPDH (Clone:1A6), Mouse mAb

36

30201ES

GAPDH, Rabbit pAb

36

30202ES

α-Tubulin, Mouse mAb

50-55

30304ES

β-Tubulin, Mouse mAb

50-55

30301ES

β-Tubulin, Rabbit pAb

50-55

30302ES

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